  | 
                                       
                                          
                                          			
                                          		
                                           Cytokines 
                                             http://press2.nci.nih.gov/sciencebehind/immune/immune15.htm 
                                             Cytokines are diverse and potent chemical messengers secreted by the cells of the immune system—and
                                             the chief tool of T cells. 
                                             Lymphocytes, including both T cells and B cells, secrete lymphokines, while monocytes and
                                             macrophages secrete monokines. 
                                             Binding to specific receptors on target cells, cytokines recruit many other cells and substances
                                             to the field of action. Cytokines encourage cell growth, promote cell activation, direct cellular traffic, and destroy target
                                             cells—including cancer cells. Because they serve as a messenger between white cells, or leukocytes, many cytokines are
                                             also known as interleukins 
                                             At least two types of lymphocytes are killer cells—cytotoxic T cells and natural killer
                                             cells. 
                                             To attack, cytotoxic T cells need to recognize a specific antigen, whereas natural killer
                                             or NK cells do not. Both types contain granules filled with potent chemicals, and both types kill on contact. The killer binds
                                             to its target, aims its weapons, and delivers a burst of lethal chemicals. 
                                             Phagocytes and Granulocytes 
                                             Phagocytes are large white cells that can engulf and digest foreign invaders. 
                                             They include monocytes, which circulate in the blood, and macrophages, which are found in
                                             tissues throughout the body, as well as neutrophils, cells that circulate in the blood but move into tissues where they are
                                             needed. Macrophages are versatile cells; they act as scavengers, they secrete a wide variety of powerful chemicals, and they
                                             play an essential role in activating T cells. 
                                             Neutrophils are not only phagocytes but also granulocytes: they contain granules filled with
                                             potent chemicals. These chemicals, in addition to destroying microorganisms, play a key role in acute inflammatory reactions.
                                             Other types of granulocytes are eosinophils and basophils. Mast cells are granule-containing cells in tissue. 
                                             Phagocytes in the Body : 
                                               
                                             Organs of the Immune System: 
                                              
                                              
                                           
                                          
                                             
                                             
                                             
                                             | 
                                              http://www.hon.ch/Library/Theme/Allergy/Glossary/leukotriene.html 
                                             Leukotrienes   |  
                                             
                                             
                                             
                                             
                                             
                                             MeSH definition: A family of biologically active compounds derived
                                             from arachidonic acid by oxidative metabolism through the 5-lipoxygenase pathway. They participate in host defense reactions
                                             and pathophysiological conditions such as immediate hypersensitivity and inflammation. They have potent actions on many essential
                                             organs and systems, including the cardiovascular, pulmonary, and central nervous system as well as the gastrointestinal tract
                                             and the immune system. 
  |    |    
                                             
                                             
                                             
                                             
                                             | Leukotriene B4  |  
                                             
                                             
                                             
                                             
                                             
                                             | MeSH definition: The major metabolite in neutrophil polymorphonuclear
                                             leukocytes. It stimulates polymorphonuclear cell function (degranulation, formation of oxygen-centered free radicals, arachidonic
                                             acid release, and metabolism). (From Dictionary of Prostaglandins and Related Compounds, |    |    
                                               
                                               
                                             Leukotrienes and prostaglandins are derivatives of arachidonic acid (AA) an unsaturated fatty acid produced from membrane phospholipids. The principal pathways of arachidonic acid metabolism are :
                                             
                                             - the 5-lipoxygenase pathway, which produces a collection of leukotrienes (LT) and 
                                             
 - the cyclooxygenase pathway, which yields a number of prostaglandins (PG) and thromboxanes
                                             (Tx). 
  All three are synthesized by monocytes and macrophages. Mast cells and basophils generate a mixture of leukotrienes. The products of both pathways act in concert to cause inflammation with prostaglandins producing fever and pain. Aspirin, ibuprofen, and certain other nonsteroidal anti-inflammatory
                                             drugs (NSAIDs) achieve their effects (fever and pain reduction) by blocking the activity of cyclooxygenase. [Discussion
                                              
                                           
                                          
                                             leukotriene:  http://cancerweb.ncl.ac.uk/cgi-bin/omd?leukotriene+a4
                                             
                                             
                                             Chemical name: 6,8,10,14-Eicosatetraenoic acid, 5,12-dihydroxy-, (S-(R*,S*-(E,Z,E,Z)))-  
                                             
                                              
                                           
                                          
                                             Macrophages are involved at all stages of the immune response. First, as already outlined, they act as rapid
                                             protective mechanism which can respond before T cell-mediated amplification has taken place 
                                             Monocytes lose their myeoloperoxidase activity during conversion to tissue macrophages 
                                             However, macrophages may acquire MPO from their environment by pinocytosis or from ingested neutrophils.
                                             In this way, especially macrophages in inflammatory site with the intensive cell destruction, can gain myeloperoxidase (or
                                             other peroxidase). Such peroxidase then participates in cytotoxic mechanisms of macrophages. 
                                             Macrophages are important producers of arachidonic acid and its metabolites. Upon phagocytosis macrophages
                                             release up to 50% of their arachidonic acid from membranous esterified glycerol phospholipid. It is immediately metabolized
                                             into different types of prostanoids. From them prostaglandins, especially PGE , and prostacyclin (PGI ) are characterized as pro-inflammatory agents: they induce vasodilatation, act synergeticly with complement component C5a
                                             and LTB , mediate fever and myalgia response to IL-1, in the combination with bradykinin and histamine they contribute to erythema,
                                             oedema, and pain induction. Tromboxan TXA  is considered as an inflammatory mediator; it facilitates platelet aggregation and triggers vasoconstriction. LTB  is the efficient chemoatractant substance. A mixture of LTC , LTD  and LTE  became known as slow-reacting substance of anaphylaxis (SRS-A). These leukotrienes are important mediators of bronchial asthma,
                                             since they provoke long-term contractions of bronchial smooth muscl
                                               
                                           
                                          A. Mast Cells [5] http://www.outlinemed.com/demo/allergy/4850.htm See outline "Hypersensitivity Reactions" 
                                             
                                             - Mainly found in tissues, low numbers in blood of normal persons 
                                             
 - Usually found beneath epithelial surfaces and near blood vessels 
                                             
 - Long lived cells (weeks to months) 
                                             
 - Derived from CD34+ bone marrow progenitor cells 
                                             
                                             - Disbursed to tissue as precursor cells, probably related to basophils 
                                             
 - Mast cell precursors fully mature in specific tissues 
                                             
 - Development requires mast-cell growth factor, the ligand for the c-kit gene 
  
                                              - Preformed granules in cytoplasm, released on activation of cells 
                                             
                                             - Have immunoglobulin (Ig) Fc receptors, specific primarily for IgE 
                                             
 - Responsible for a variety of IgE dependent and some independent reactions 
                                             
 - Mast cell disease usually occurs in skin; also skeleton, bone marrow, GI tract, CNS 
  
                                              - Mast Cell Mediators 
                                             
                                             - Histamine and metabolites 
                                             
 - Tryptase 
                                             
 - Prostaglandin D2 
                                             
 - Heparin 
  
                                              - No humans with absence of mast cells have been reported 
                                             
   
                                           
                                          
                                             
                                             
                                             
                                             | Curr Cancer Drug Targets. 2004 May;4(3):267-83. | 
                                                |   
                                              Leukotriene A4 hydrolase
                                             as a target for cancer prevention and therapy.
  Chen X, Wang S, Wu N, Yang CS.
  Susan Lehman Cullman Laboratory for Cancer Research, Department of Chemical
                                             Biology, Ernest Mario School of Pharmacy, Rutgers, the State University of New Jersey, 164 Frelinghuysen Road, Piscataway,
                                             New Jersey 08854, USA. xiaochen@rci.rutgers.edu
  Leukotriene A4 hydrolase (LTA4H) is a bifunctional zinc enzyme with
                                             the activities of epoxide hydrolase and aminopeptidase. As an epoxide hydrolase, LTA4H catalyzes the hydrolysis of the epoxide
                                             LTA4 to the diol, leukotriene B4 (LTB4), which mainly functions as a chemoattractant and an activator of inflammatory cells.
                                             As an aminopeptidase, LTA4H may process peptides related to inflammation and host defense. In a chronic inflammation-associated
                                             animal model of esophageal adenocarcinoma, we have shown that LTA4H was overexpressed in tumor as compared to normal tissues.
                                             Bestatin, an LTA4H inhibitor, suppresses tumorigenesis in this animal model. Since LTA4H has long been regarded as an anti-inflammatory
                                             target, we propose LTA4H as a target for prevention and therapy of cancers, especially those associated with chronic inflammation.
                                             Here we review the gene structure, expression, regulation and functions of LTA4H, as well as its involvement in carcinogenesis.
                                             We believe LTA4H/LTB4 may play an important role in chronic inflammation associated carcinogenesis by at least two mechanisms:
                                             a) the inflammation-augmenting effect on inflammatory cells through positive feedback mediated by its receptors and downstream
                                             signaling molecules; and b) the autocrine (Secretion of a substance, such as a growth factor, that stimulates the secretory cell itself. One route to independence of growth control is by autocrine growth factor production. ) growth-stimulatory effect of LTB4 produced by epithelial cells, and the paracrine ( Form of signalling in which
                                             the target cell is close to the signal releasing cell. Neurotransmitters and neurohormones are usually considered to fall into this category. ) growth-stimulatory effect of LTB4 produced by inflammatory cells, on precancerous and cancer
                                             cells. Based on our present knowledge, inhibitors of LTA4H or antagonists of LTB4 receptors may be used alone or in combination
                                             with other agents (e.g., cyclooxygenase 2 inhibitors) in cancer prevention and treatment trials to test their effectiveness.
  
                                             
                                           
                                          
                                             
                                             
                                             
                                             | Gene. 1995 Aug 19;161(2):249-51. | 
                                              |   
                                                 Amino-acid sequence and tissue
                                             distribution of guinea-pig leukotriene A4 hydrolase.
  Minami M,
                                             Mutoh H, Ohishi N, Honda Z, Bito H, Shimizu T.
  Department of Biochemistry, Faculty of Medicine, University of Tokyo,
                                             Japan.
  The guinea-pig leukotriene A4 hydrolase (LTA4H)-encoding cDNA was isolated from a guinea-pig lung cDNA
                                             library by cross-hybridization using a human probe. The deduced amino acid (aa) sequence consists of 611 aa (68 756 Da) and
                                             contains all twelve internal peptide and N-terminal sequences determined from the purified enzyme from guinea-pig intestine.
                                             The aa identity of the guinea-pig enzyme with its human, mouse and rat counterparts was 92.9, 90.5 and 90.4%, respectively.
                                             The previously characterized zinc-binding motif and a putative active site were highly conserved, supporting the aminopeptidase
                                             activity described for this enzyme. RNA blot analysis demonstrated ubiquitous (Present everywhere. The small protein called ubiquitin was so-named because it is present in all types of cells and its amino acid sequence is identical in all creatures from insects to humans.) expression of the LTA4H mRNA. 
                                              
                                           
                                          
                                             Translocation of 5-lipoxygenase to the membrane in human
                                             leukocytes challenged with ionophore A23187
                                             reference 25 in co-localization article/Brock 
                                             CA Rouzer and S Kargman  Merck Frosst Canada Inc., Pointe Claire-Dorval, Quebec, Canada.
                                             
                                              Challenge of human peripheral blood leukocytes with ionophore A23187 resulted in leukotriene (LT)
                                             synthesis, a decrease in total cellular 5- lipoxygenase activity, and a change in the subcellular localization
                                             of the enzyme. In homogenates from control cells, greater than 90% of the 5-lipoxygenase activity and
                                             protein was localized in the cytosol (100,000 X g supernatant=The soluble liquid fraction of a sample after centrifugation or precipitation of insoluble solids). Ionophore challenge (2 microM) resulted in a loss of approximately 55% of the enzymatic activity and 35% of
                                             the enzyme protein from the cytosol. Concomitantly, there was an accumulation of inactive 5-lipoxygenase
                                             in the membrane (100,000 X g pellets) which accounted for at least 45% of the lost cytosolic protein. There was
                                             a good correlation between the quantities of LT synthesized and 5-lipoxygenase recovered in the membrane
                                             over an ionophore concentration range of 0.1-6 microM. The time course of the membrane association was similar
                                             to that of LT synthesis. Furthermore, although the pellet-associated enzyme recovered from ionophore-treated
                                             leukocytes was inactive, an irreversible, Ca2+-dependent membrane association of active 5-lipoxygenase could be
                                             demonstrated in cell-free systems. To determine whether ionophore treatment induced proteolytic degradation
                                             of 5-lipoxygenase, the total activity and protein content of 10,000 X g supernatants from control and ionophore-treated
                                             cells were examined. These supernatants, which included both cytosolic and membrane-associated enzyme, showed a
                                             35% loss of 5-lipoxygenase activity but only an 8% loss of enzyme protein as a result of ionophore challenge
                                             (2 microM). Therefore, the majority of the loss of 5- lipoxygenase activity was most likely due to suicide inactivation
                                             during the LT synthesis, rather than to proteolytic degradation. Together these results are consistent
                                             with the hypothesis that ionophore treatment results in a Ca2+-dependent translocation of 5- lipoxygenase from
                                             the cytosol to a membrane-bound site, that the membrane-associated enzyme is preferentially utilized
                                             for LT synthesis, and that it is consequently inactivated. Thus, membrane translocation of 5-lipoxygenase may be
                                             an important initial step in the chain of events leading to full activation of this enzyme in the intact
                                             leukocyte. 
  
                                             LTA4 serves as the precursor for the potent 
                                             chemotactic factor, LTB4 as well as for the smooth muscle 
                                             contracting agonists LTC4, LTD4 and LTE4. These products 
                                             are secreted by leukocytes after exposure to various immunologic 
                                             and inflammatory stimuli, and their biological activities 
                                             suggest that they may play a role in immediate hypersensitivity 
                                             reactions and inflammation  (4). Therefore, the regulation
                                             of the 5-lipoxygenase may be of great importance to 
                                             the pathophysiology of these processes. 
                                              
                                           
                                          
                                             Calcium ionophore:
                                             Ionophores are compounds that increase the permeability of cellular membrane barriers to ions by functioning
                                             as mobile ion carriers or channel formers. They contain hydrophobic regions conferring lipid solubility and hydrophilic ion-binding
                                             regions which delocalise the charge of the ion to shield it from the hydrophobic regions of the membrane lipid bilayer. 
                                               
                                             
 
                                              
                                             
                                             
                                               Calcium ionophoreA23187 is an artificial mobile iron carrier that normally acts as an ion-exchange shuttle molecule transporting one divalent
                                             calcium ion into the cell in exchange of two H +. As intracellular calcium levels can be monitored by a variety of fluorescent probes use of A23187 provides information about the involvement of elevated levels of cytosolic free calcium (and indirect information
                                             about associated secondary messenger systems) following cytokine receptor mediated signal transduction processes. A postulated
                                             participation of calcium in the process under study can be confirmed by employing calcium-specific chelators such as EGTA
                                             to produce very low intracellular calcium levels which should then block the response. 
                                             
 A23187 can cause cell activation , differentiation, or proliferation and thus mimics cellular processes normally observed in response to cytokines . It can be used, therefore, to probe functional capacities of cells and to dissect complex processes into a
                                             series of discrete stages at the molecular level. Responses can include production and release cytokines , expression of an ERG (Early response gene ), an Oncogene , differentiation antigens (see also: CD antigens ), and intracellular adhesion molecules, cell death by apoptosis , progression through the Cell cycle , or inhibition of any of these processes. 
                                              Simultaneous treatment of cells with calcium ionophores and other agents (cytokines , drugs, hormones) can be used to investigate whether any of these agents affect (enhance or reverse) any of
                                             the elicited responses. 
                                              For other agents used to dissect signal transduction pathways mediated by cytokines see: Bryostatins , Calphostin C , Genistein , H8 , Herbimycin A , K-252a , Lavendustin A , Phorbol esters , Okadaic acid , Staurosporine , Suramin , Tyrphostins , Vanadate . 
                                               
                                           
                                          
                                               
                                             
                                              is widely used for DNA/RNA detection/isolation due to the extremely high affinity of
                                             the biotin-streptavidin interaction (association constant 1015/M). Biotin moieties can be incorporated within
                                             an oligo on any place and in any number. We have long and super-long tethering arms covalently attached to biotin for improved binding kinetics, increased binding capacity of large DNA fragments, and for accessibility to enzymatic
                                             events occurring at the solid-phase surface.
  
                                             
                                             Blocking kit reagents may be used to block nonspecific binding of Biotin/Avidin System reagents: 
                                             http://www.vectorlabs.com/Protocols/SP2001.pdf 
                                             Principle: 
                                             Some tissues may bind avidin, biotinylated horseradish peroxidase or other Biotin/Avidin System
                                             components 
                                             without prior addition of biotinylated antibody. This binding may be due to endogenous biotin or
                                             biotin-binding 
                                             proteins, lectins, or nonspecific binding substances present in the section. If a high background
                                             is present using the 
                                             ABC reagents (or other avidin conjugate) in the absence of biotinylated secondary antibody, pre-treatment
                                             of the 
                                             tissue with avidin, followed by biotin (to block the remaining biotin binding sites on the avidin),
                                             may be required. 
                                             The blocking kit consists of an Avidin D solution and a biotin solution. Pre-treatment of the section
                                             with the 
                                             Avidin D solution should always be followed by incubation with the biotin solution. The Avidin
                                             D and biotin 
                                             solutions should be used directly as supplied. 
                                             Suggested Protocol for Tissue Sections: 
                                             After incubation with normal serum, incubate section with Avidin D solution for 15 minutes. Rinse
                                             briefly 
                                             with buffer, then incubate for 15 minutes with the biotin solution. These steps should be performed
                                             prior to 
                                             the addition of primary antibody or lectin. 
                                               
                                             Biotin-(Strept)avidin Systems: 
                                             http://www.vectorlabs.com/products.asp?catID=28&locID=0
 
  
                                             
                                              
                                                   
                                             
                                              
                                             
                                             
                                             | Previous Methods  |  
                                             
                                             | Before we offered the Biotin-Avidin System, which now also includes the use of streptavidin,
                                             researchers used directly-labeled, enzyme-tagged primary and secondary antibodies for detection of tissues, blots, and microtiter
                                             plates (Figs. 1 and 2). These direct/indirect methods were followed by the PAP method (Fig. 3), which provided some amplified
                                             signal.  |  
                                             
                                             | The Biotin-Avidin System  |  
                                             
                                             | When we introduced the Biotin-Avidin System a substantial amplification over the earlier
                                             methods was achieved. Avidin is an egg-white derived glycoprotein with an extraordinarily high affinity (affinity constant
                                             > 1015 M-1) for biotin. Streptavidin is similar in properties to avidin but has a lower affinity
                                             for biotin. Many biotin molecules can be coupled to a protein, enabling the biotinylated protein to bind more than one molecule
                                             of avidin. If biotinylation is performed under gentle conditions, the biological activity of the protein can be preserved.
                                             By covalently linking avidin with different ligands such as fluorochromes, enzymes or EM markers, what we have termed the
                                             Biotin-Avidin System can be utilized to study a wide variety of biological structures and processes. The Biotin-Avidin System
                                             has proven to be particularly useful in the detection and localization of antigens, glycoconjugates, and nucleic acids by
                                             employing biotinylated antibodies, lectins, or nucleic acid probes.  |  
                                             
                                             | Various Biotin-Avidin Methods  |  
                                             
                                             | Over the years, several basic biotin-avidin techniques have evolved. One of the earliest
                                             and currently least used has been termed the “sandwich” or “bridge” technique and relies on the multiple
                                             biotin binding sites on avidin. Following the application of a biotinylated antibody, avidin is added, and then a biotinylated
                                             enzyme or EM marker. (This technique is not shown.)  |  
                                             
                                             | The next technique that evolved has been called the “covalent conjugate”
                                             or “labeled avidin” (or “labeled streptavidin”) procedure (Fig. 4). Following the addition of a biotinylated
                                             primary or secondary reagent, a covalent conjugate between (strept)avidin and an enzyme, fluorochrome, or EM marker is added.
                                              |  
                                             
                                             | One example might be staining a histological section with monoclonal mouse primary
                                             antibody directed toward a specific determinant on the cells. After the primary antibody is applied, biotinylated anti-mouse
                                             IgG is added, followed by peroxidase conjugated avidin.  |  
                                             
                                             | Development is accomplished by adding an appropriate substrate for peroxidase.
                                              |  
                                             
                                             | The most recent and the most widely used technique is our patented(U.S. Patent No.
                                             4,684,609) procedure called the “ABC” or “preformed complex” method. After application of a biotinylated
                                             secondary or primary antibody, a preformed complex between avidin or streptavidin and a biotinylated enzyme is added (Figs.
                                             5 and 6). This latest technique appears to be the most sensitive in many applications and is discussed more fully in the VECTASTAIN®
                                             ABC section of this catalog.  |  
                                             
                                                |  
                                             
                                                |  
                                             
                                             | Although each technique has its merit, it is now widely appreciated that the Biotin-Avidin
                                             System provides the highest sensitivity in fluorescence and enzyme-based detection, versatility that allows easy interchange
                                             or introduction of multiple markers, and the ability to localize or detect antigens which are difficult or impossible to see
                                             or measure with other systems.  |  
                                             
                                             | Advantages of the Biotin-Avidin System  |  
                                             
                                             | The Biotin-Avidin System has several advantages over direct coupling of the marker
                                             to an antibody, a lectin or a nucleic acid probe.  |  
                                             
                                             | 
                                             The Biotin-Avidin System can improve sensitivity because of the potential for amplification
                                             due to multiple site binding.  |  
                                             
                                             | 
                                             Avidin can be prepared with high fluorochrome to protein ratios and avidin conjugates
                                             are very stable.  |  
                                             
                                             | 
                                             Only a single labeled conjugate, namely avidin or streptavidin, need be kept on hand
                                             since it can be used with a variety of biotinylated lectins, antibodies or probes.  |  
                                             
                                             | 
                                             Biotin-Avidin System reagents can overcome the problem of background fluorescence
                                             sometimes encountered in the use of heavily fluorescein-labeled or rhodamine-labeled antibody. These conjugates are sometimes
                                             “sticky” and adsorb nonspecifically to tissues, while fluorochrome-conjugated Avidin D does not.  |  
                                             
                                             | 
                                             The extraordinarily high affinity between avidin or streptavidin and biotin assures
                                             the user of a rapidly formed and stable complex between the (strept)avidin conjugate and the biotin-labeled protein.
                                              |  
                                             
                                             | 
                                             Simultaneously localizing more than one antigen in the same tissue section can be
                                             performed even with two or three primary antibodies from the same species. By using either separate enzyme systems, two different
                                             substrates for the same enzyme, or assorted fluorochrome conjugates, more than one antigen can be localized in the same tissue
                                             section.  |  
                                             
                                             | Applications of the Biotin-Avidin System  |  
                                             
                                             | Biotin-Avidin System reagents have been found to be superior substitutes for many
                                             conventional, less sensitive methods. Just a few of these uses include:  |  
                                             
                                             | 
                                             Immunohistochemical staining  |  
                                             
                                             | 
                                             Introducing multiple labels into tissues  |  
                                             
                                             | 
                                             Localizing hormone binding sites  |  
                                             
                                             | 
                                             Flow Cytometry  |  
                                             
                                             | 
                                             Nitrocellulose and nylon transfer blot detection  |  
                                             
                                             | 
                                             In situ hybridization  |  
                                             
                                             | 
                                             Radio-, enzyme-, and fluorescent immunoassays  |  
                                             
                                             | 
                                             Neuronal tracing  |  
                                             
                                             | 
                                             Genetic mapping  |  
                                             
                                             | 
                                             Hybridoma screening  |  
                                             
                                             | 
                                             Purification of cell surface antigens  |  
                                             
                                             | 
                                             Coupling of antibodies and antigens to agarose  |  
                                             
                                             | 
                                             Examination of membrane vesicle orientation  |  
                                             
                                             | * |   
                                              
                                           
                                          
                                             adenocarcinoma:
                                             <oncology, tumour> A form of cancer that involves cells from the lining of the walls of many different organs of the body. Breast cancer is a type of adenocarcinoma.  
                                             Esophageal adenocarcinoma is the faster growing cancer in the western world. Major risk factors for this cancer
                                             are Gastroesophageal Reflux Disease (GERD) and Barrett's esophagus.   http://heartburn.about.com/od/esophagealcancer/ 
                                             
                                             esophagogastroduodenal anastomosis: anastomosing the duodenum to the gastroesophageal junction 
                                             
                                             columnar-lined esophagus: 
                                             columnar:1:of, relating to, resembling, or characterized by columns/ 2:of, relating to, being, or composed of tall narrow somewhat cylindrical or prismatic epithelial cells  
                                             lined: to place or form a line along  
                                             
                                              
                                               
                                           
                                          
                                             
                                             
                                             
                                             | Mutat Res. 2003 Feb-Mar;523-524:137-44. | 
                                              |   
                                                 Mechanisms and
                                             applications of non-steroidal anti-inflammatory drugs in the chemoprevention of cancer.
  Steele VE, Hawk
                                             ET, Viner JL, Lubet RA.
  Division of Cancer Prevention, National Cancer Institute, National Institutes of Health,
                                             9000 Rockville Pike, Bethesda, MD 20892-7322, USA. vsly@nih.gov
  Biological and chemical irritants can be the cause
                                             of irritation in a variety of organ sites. It is becoming well understood that chronic irritation in any form can initiate
                                             and accelerate the cancer process in these same organs. This understanding comes in part from the many epidemiologic studies
                                             which point out that chronic inflammation correlates with increased risk of developing cancer in that organ which is affected.
                                             One of the hallmarks of chronic irritation is the increased activity in the arachidonic acid pathway which provides many of
                                             the necessary inflammatory biochemical mediators to this process. Arachidonic acid metabolism diverges down two main pathways,
                                             the cyclooxygenase (COX) and the lipoxygenase (LOX) pathways. The COX pathway leads to prostaglandin and thromboxane production
                                             and the LOX pathway leads to the leukotrienes (LTs) and hydroxyeicosatetraenoic acids (HETEs). These classes of inflammatory
                                             molecules exert profound biological effects which enhance the development and progression of human cancers. A large number
                                             of synthetic drugs and natural products have been discovered that block many of these key pathways. Much experimental evidence
                                             in animals has shown that inhibition of the key enzymes which drive these pathways can, in fact, prevent, slow or reverse
                                             the cancer process. The data are convincing in a number of organ sites including colon, breast, lung, bladder and skin. More
                                             recently, double-blinded randomize clinical trials in humans have shown the prevention of colonic polyps by anti-inflammatory
                                             agents. These studies have primarily used non-steroidal anti-inflammatory drugs (NSAIDS) which block the COX pathways. Recent
                                             preclinical studies indicate that the LOX pathway also may be an important target for cancer prevention strategy. The expression
                                             of high levels of these enzymes in cancerous tissues make them an obvious first target for cancer prevention strategies. As
                                             newer more specific drugs are developed with few adverse effects this important prevention strategy may become a reality. 
                                              
                                           
                                          Clinical Cancer Research Vol. 10, 6703-6709, October 1, 2004 © 2004 American Association for Cancer Research  
                                             
                                             
                                             
                                             
                                              
                                             
                                             Experimental Therapeutics, Preclinical Pharmacology |   
                                             Overexpression of 5-Lipoxygenase in Rat and Human Esophageal
                                             Adenocarcinoma and Inhibitory Effects of Zileuton and Celecoxib on Carcinogenesis Xiaoxin
                                             Chen1, Su Wang1, Nan Wu1, Sandeep Sood1,
                                             Peng Wang1, Zhe Jin1, David G. Beer2, Thomas
                                             J. Giordano3, Yong Lin4, Wei-chung J. Shih4, Ronald
                                             A. Lubet5 and Chung S. Yang1 
                                             1 Susan Lehman Cullman Laboratory for Cancer Research, Department of Chemical Biology, Ernest Mario
                                             School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, New Jersey; 2 Section of General Thoracic
                                             Surgery, Department of Surgery and 3 Department of Pathology, University of Michigan, Ann Arbor, Michigan; 4
                                             Division of Biometrics, University of Medicine and Dentistry of New Jersey School of Public Health, New Brunswick, New Jersey;
                                             and 5 Chemoprevention Branch, Division of Cancer Prevention, National Cancer Institute, Bethesda, Maryland 
                                              Purpose: Aberrant arachidonic acid (AA) metabolism, especially through the cyclooxygenase
                                             (Cox) and 5-lipoxygenase (5-Lox) pathways, has been suggested to play an important role in the development
                                             of esophageal adenocarcinoma (EAC). The purpose of this study was to investigate the expression of 5-Lox in
                                             EAC of a rat model and in human samples as well as the chemopreventive effects of zileuton (a specific 5-Lox
                                             inhibitor) and celecoxib (a specific Cox2 inhibitor) in the rat EAC model. 
                                              Experimental Design: 5-Lox expression in EAC of a rat esophagogastroduodenal anastomosis
                                             model and of humans was examined with immunohistochemistry. A chemoprevention study was designed to test whether
                                             zileuton and celecoxib could suppress aberrant AA metabolism and esophageal adenocarcinogenesis.
                                             
                                              Results: With immunohistochemistry, we found that 5-Lox was overexpressed during esophageal
                                             adenocarcinogenesis in our rat model and in humans. In the chemoprevention study, EAC incidence was
                                             reduced in a dose-dependent manner from 68.8% (11 of 16) to 44.4% (8 of 18; P > 0.05) and 31.3% (5 of
                                             16; P < 0.05) by 500 and 1,000 ppm zileuton, respectively, and to 33.3% (7 of 21; P
                                             < 0.05) and 20% (3 of 15; P < 0.05) by 500 and 1,000 ppm celecoxib, respectively. With isobolographic
                                             analysis, zileuton and celecoxib, both at a dose of 500 ppm, had an additive effect by reducing the
                                             tumor incidence to 16.7% (3 of 18, P < 0.01). Leukotriene B4 and prostaglandin E2
                                             levels in the esophageal tissues were also significantly reduced by zileuton and celecoxib. 
                                              Conclusions: This study clearly demonstrated that 5-Lox and Cox2 play important roles in
                                             the development of EAC. Both zileuton and celecoxib had inhibitory effects on esophageal adenocarcinogenesis
                                             through inhibition on their respective enzymes of AA metabolism. 
                                               
                                             
  
                                           
                                          Copyright © 2002 Elsevier Science Inc. All rights reserved. 
                                             
                                             Leukotriene A4 hydrolase 
                                              Jesper Z. Haeggström ,  , a, Filippa Kulla, Peter C. Rudberga, Fredrik Tholandera and Marjolein M. G. M. Thunnissenb 
  a Department of Medical Biochemistry and Biophysics, Division of Chemistry II, Karolinska Institutet,
                                             S-171 77, Stockholm, Sweden b Department of Biochemistry, Arrhenius Laboratories A4, University of Stockholm, S-106 91, Stockholm,
                                             Sweden 
  Available online 6 September 2002. 
 
 
  
                                             
                                             Abstract
                                             The leukotrienes (LTs) are a family of lipid mediators involved in inflammation and allergy. Leukotriene B4
                                             is a classical chemoattractant, which triggers adherence and aggregation of leukocytes to the endothelium at only nanomolar
                                             concentrations. In addition, leukotriene B4 modulates immune responses, participates in the host-defense against
                                             infections, and is a key mediator of PAF-induced lethal shock. Because of these powerful biological effects, leukotriene B4
                                             is implicated in a variety of acute and chronic inflammatory diseases, e.g. nephritis, arthritis, dermatitis, and chronic
                                             obstructive pulmonary disease. The final step in the biosynthesis of leukotriene B4 is catalyzed by leukotriene
                                             A4 hydrolase, a unique bi-functional zinc metalloenzyme with an anion-dependent aminopeptidase activity. Here we
                                             describe the most recent developments regarding our understanding of the structure, function, and catalytic mechanisms of
                                             leukotriene A4 hydrolase. 
                                              Author Keywords: Leukotriene; Aminopeptidase; Inflammation; Crystal structure; Epoxide hydrolase 
  
                                                
                                           
                                          Copyright © 1998 Elsevier Science Ltd. All rights reserved 
                                             Molecules in focus 
                                             
                                             Leukotriene B4 
                                              S. W. Crooks* and R. A. Stockley 
  Department of Medicine, Queen Elizabeth Hospital, Edgbaston, Birmingham B15 2TH UK
                                             
  Received 19 July 1997; accepted 19 September 1997. Available online 22 July 1998. 
 
 
  
                                             
                                             Abstract
                                             Leukotriene B4 is a pro-inflammatory mediator synthesised in myeloid cells from arachidonic acid. Synthesis
                                             is catalysed by 5-lipoxygenase and leukotriene A4 hydrolase and is increased by inflammatory mediators including endotoxin,
                                             complement fragments, tumor necrosis factor and interleukins. A nuclear membrane protein, 5-lipoxygenase activating protein,
                                             is an essential co-factor for 5-lipoxygenase. Leukotriene B4 induces recruitment and activation of neutrophils, monocytes
                                             and eosinophils. It also stimulates the production of a number of proinflammatory cytokines and mediators indicating an ability
                                             to augment and prolong tissue inflammation. Elevated levels of leukotriene B4 have been found in a number of inflammatory
                                             diseases and levels are related to disease activity in some of these. Initial data from pharmacological inhibition studies
                                             support a role for leukotriene B4 in the pathogenesis of neutrophil mediated tissue damage, and treatments which reduce its
                                             production or block its effects may prove beneficial in neutrophil mediated inflammatory diseases. 
                                                
                                           
                                          Leukotriene A4-hydrolase expression
                                             and leukotriene B4 levels in chronic inflammation of bacterial origin Immunohistochemistry and reverse-phase
                                             high-performance liquid chromatography analysis of oral mucosal epithelium 
                                             Virchows Archiv  
                                             Publisher: Springer-Verlag Heidelberg  
                                             ISSN: 0945-6317 (Paper) 1432-2307 (Online)  
                                             DOI: 10.1007/s00428-001-0597-2  
                                             Issue: Volume 440, Number 6
  
                                             Date:  June 2002  
                                             Pages: 627 - 634  
                                             
  
                                             Jörg Eberhard, Søren Jepsen, Markus Tiemann, Ralph Krause, Yahya Açil, Hans-Karl Albers  
                                             A1 Department of Operative Dentistry and Periodontology, University of Kiel, Arnold-Heller-Strasse
                                             16, 24105 Kiel, Germany A2 Department of Hematopathology and Lymph Node Registry, University of Kiel, Germany A3 Department
                                             of Oral and Maxillofacial Surgery, University of Kiel, Germany
  
                                             Abstract:  
                                             
                                              Abstract. Chronic inflammation of the oral epithelium of bacterial origin is associated with elevated leukotriene
                                             B4 (LTB4) levels. We investigated leukotriene A4 (LTA4)-hydrolase expression and
                                             LTB4 levels in oral epithelium in relation to the clinical disease manifestation and immunohistopathology and LTA4-hydrolase
                                             expression in cultured oral keratinocytes. In 11 patients, three different types of biopsy specimens of the oral mucosa tissues
                                             were examined . Each sample was divided, and one-half was analysed using immunohistochemistry with antibodies to LTA4-hydrolase,
                                             CD1a, CD3, CD19, macrophages/monocytes and granulocytes. The other half of the sample was homogenised and analysed using reverse-phase
                                             high-performance liquid chromatography to determine LTB4 levels. We found strong LTA4-hydrolase expression
                                             in basal cells of the oral epithelium from tissue samples that appeared clinically healthy; however, histologically a mild
                                             chronic inflammation was observed. In contrast, patients with symptoms of an inflammation of the oral mucosa showed only weak
                                             LTA4-hydrolase staining of the epithelial cell layers, but strong immunoreactivity in endothelial and invading
                                             inflammatory cells. LTB4 levels were elevated in inflamed tissues compared with non-inflamed controls. Most significantly,
                                             there was a strong association between the immunohistochemical detection of the enzyme, LTB4 levels, cellular infiltration
                                             and the clinical disease manifestations. In vitro experiments indicated that LTA4-hydrolase expression may be induced
                                             by bacterial contamination. This study suggests that LTA4-hydrolase expression and elevated LTB4 levels
                                             in oral mucosal epithelium are integral parts of the induction and progression of chronic inflammatory reactions. Epithelial
                                             cells may participate in early stages of inflammation as a source of LTB4.
                                              
                                           
                                          
                                             
                                             
                                             
                                             | Curr Pharm Des. 2001 Feb;7(3):163-79. | 
                                              |   
                                              Inhibitors of leukotriene
                                             A4 (LTA4) hydrolase as potential anti-inflammatory agents.
  Penning TD.
  Pharmacia, Corp.,
                                             4901 Searle Parkway, Skokie, IL 60077, USA. thomas.d.penning@monsanto.com
  Leukotriene A4 (LTA4) hydrolase is a zinc-containing
                                             enzyme which stereospecifically catalyzes the hydrolysis of the epoxide LTA4 to the diol leukotriene B4 (LTB4). There is substantial
                                             evidence that LTB4 plays a significant role in the amplification of many inflammatory disease states. Therapeutic agents which
                                             selectively inhibit LTA4 hydrolase would block the formation of LTB4 and thus be potentially useful for the treatment of inflammation.
                                             Numerous inhibitors of LTA4 hydrolase have been reported over the past 15-20 years. Several early inhibitors were based on
                                             the structure of the natural substrate, LTA4. Later approaches utilized known inhibitors of related zinc-containing metalloproteinases
                                             and led to the identification of captopril, bestatin and kelatorphan as potent inhibitors of LTA4 hydrolase. This led to the
                                             design of a number of peptide and non-peptide analogs which contained potential zinc-chelating moieties, including thiols,
                                             hydroxamates and norstatines. A more recent series of non-peptidic, non-zinc chelating inhibitors of LTA4 hydrolase has been
                                             reported. This work led to the identification of several novel classes of analogs, including imidazopyridines, amidines and
                                             cyclic and acyclic amino acid derivatives, ultimately resulting in the identification of two potential clinical candidates
                                             SC-56938 and SC-57461A.
  
                                              
                                           
                                          Copyright © 1994 Published by Elsevier Science Inc. 
                                             
                                             Modulation of pulmonary leukotriene formation and perfusion
                                             pressure by bestatin, an inhibitor of leukotriene A4 hydrolase 
                                              Danny T. Muskardin, Norbert F. Voelkel and F. A. Fitzpatrick  
  Departments of Pharmacology and Medicine, University of Colorado Health Sciences Center, Denver, CO
                                             80262, U.S.A. 
  Received 2 September 1993;  accepted 23 February 1994.  Available online 8 November 2002.
                                             
 
 
  
                                             
                                             Abstract
                                             We investigated the effects of bestatin, a prototype leukotriene A4 (LTA4 hydrolase
                                             inhibitor, on leukotriene (LT) formation and pulmonary artery perfusion pressure (Ppa) in isolated, perfused rat
                                             lungs. In lung parenchymal strips stimulated with a 10  M concentration of the Ca2+ ionophore A23187, bestatin inhibited LTB4 formation with an IC50
                                             = 10.4 ± 3.0  M (mean ± SD, N = 4). It did not alter cysteinyl LT formation, confirming that it inhibited LTA4 hydrolase
                                             selectively, without inhibiting phospholipase, 5-lipoxygenase, or LTC4 synthase. In isolated, perfused lungs stimulated
                                             with 10  M A23187, 300  M bestatin inhibited LTB4 release by 72.2 ± 10.6% (mean ± SEM, N = 6, P < 0.01) but had no significant effect
                                             on LTE4 formation (P > 0.5). In these perfused lungs, bestatin did not alter the change in Ppa following
                                             stimulation with A23187. This effect is consistent with the insubstantial re-direction of LTA4 toward formation
                                             of vasospactic cysteinyl LTs. Separate experiments used lungs from rats treated with lipopolysaccharide endotoxin in vivo,
                                             prior to isolation, perfusion, and stimulation with 5  m formyl-methionyl-leucyl-phenylalanine, in vitro. In these inflamed lungs, 750  M bestatin inhibited LTB4 formation (P < 0.05) and increased LTE4 formation (P < 0.05), compatible
                                             with selective inhibition of LTA4 hydrolase. The re-direction of LTA4 metabolism toward formation of
                                             cysteinyl LTs by inflamed, perfused lungs did not cause an increase in Ppa. 
                                                
                                           
                                          
                                              
                                             - Removal of an entire structure (such as an eyeball or tumor), without rupture, as one
                                             shells the kernel of a nut. 
                                             
 - Removal or destruction of the nucleus of a cell. 
  
                                             enucleation (enu·cle·a·tion) (e-noo²kle-a¢sh[schwa]n)
                                             [L. e out + nucleus kernel]  the removal of an organ, of a tumor, or of another body in such a way
                                             that it comes out clean and whole, like a nut from its shell. Used in connection with the eye, it denotes removal of the eyeball
                                             after the eye muscles and optic nerve have been severed. 
                                             ficoll
                                             This biochemically inert sucrose polymer is used as athickening additive in solutions and gradients 
                                             ficoll gradient
                                             A density gradient of ficoll (synthetic sucrose polymer) in solution, where concentration of the ficoll varies continuously through the solution. It is often used to separate different types of cells from each other during the process of sedimentation.  
                                             Ficoll-Hypaque technique
                                             A density-gradient centrifugation technique for separating lymphocytes from other formed elements in the blood; the sample is layered onto a Ficoll-sodium metrizoate gradient of specific density; following centrifugation, lymphocytes are collected from the plasma-Ficoll interface 
                                             ficoll http://www.med.upenn.edu/bmcrc/immune/Ficcoll_info.pdf 
                                             Ficoll ™ PM 70 and Ficoll
                                             PM 400 are high molecular weight
                                             sucrose-polymers formed by copolymerization of sucrose 
                                             with epichlorohydrin. The molecules are highly branched and 
                                             the high content of hydroxyl groups leads to very good 
                                             solubility in aqueous media. Ficoll PM 70 and PM 400 are 
                                             supplied as spray-dried powders. Ficoll behaves as an ideal 
                                             neutral sphere and has been proposed as the molecule of 
                                             choice for studying pore size distribution and the permeability 
                                             of membranes. Ficoll PM 70 and Ficoll PM 400 have 
                                             analogous structures, but differ in molecular weight, and are 
                                             therefore appropriate for different applications. 
                                             Stability 
                                             The stability of Ficoll is chiefly determined by the glycosidic 
                                             bonds in the sucrose residues. Ficoll does not contain any 
                                             ionized groups, so the structure does not react under 
                                             physiological conditions. It is stable in alkaline and neutral 
                                             solutions, but is rapidly hydrolyzed in solution at pH 3, 
                                             especially at elevated temperature. Ficoll can be sterilized by 
                                             autoclaving at 110 ºC for 30 minutes in neutral solutions. 
                                             Strong oxidizing and reducing agents should be avoided. 
                                             Shipping and storage are at ambient temperatures. 
                                             Chemical and physical properties 
                                             Ficoll is provided as a dry powder and is extremely 
                                             hydrophilic. Solutions are best prepared by slowly stirring 
                                             Ficoll into aqueous buffer. Gentle heating may be required for 
                                             complete solubilization. 
                                             Centrifugation 
                                             In centrifugation methods, the density and viscosity of the 
                                             medium are adjusted to allow particle sedimentation with a 
                                             convenient speed. With sucrose, the high osmotic pressure, 
                                             which results from the concentrations used, often damages 
                                             the cells. If, instead, you add a high molecular weight 
                                             polymer such as Ficoll, you obtain the required density 
                                             without significantly increasing the osmotic pressure. This 
                                             preserves cells intact and retains their viability. Ficoll is 
                                             therefore preferred to sucrose for forming density gradients, 
                                             and is primarily used in this way for the routine separation of 
                                             cells (10, 11, 12). 
                                             Ficoll PM 400 can be used for gradient centrifugation in all 
                                             types of centrifuge rotors and for separation at unit gravity. 
                                             For centrifugation, both discontinuous and continuous 
                                             gradients are possible. Discontinuous gradients offer two 
                                             main advantages: First, the abrupt changes in Ficoll PM 400 
                                             density mean that isolated cells are found in sharp bands at 
                                             the interface between layers of different density. This allows 
                                             for easy removal of the purified sample with a pipette. 
                                             Second, cells with great differences in density can easily be 
                                             isolated with as few as two density layers. This is achieved by 
                                             choosing densities that will prevent one or more type of cell 
                                             from entering the lower phase, banding these cell types at the 
                                             interface. To estimate the densities required for a particular 
                                             application, refer to Table 1. 
                                             Discontinuous gradients are established as follows: 
                                             1. Using Table 1 as a guide, dissolve Ficoll PM 400 in buffer 
                                             or isotonic (0.25 M) sucrose solution at various 
                                             concentrations (generally differing by 5-10% w/v), which 
                                             should separate the cells of interest. Most cells and organelles 
                                             have a buoyant density between 1.0 and 1.2 g/ml in 
                                             Ficoll PM 400. Often, a simple two-layer gradient is sufficient. 
                                             You may store these fractions in a refrigerator, but ensure 
                                             that they reach room temperature before use. 
                                             2. In normal centrifuge tubes, make layers (approx. 1 cm deep) 
                                             of decreasing density with the most dense solution at the bottom. 
                                             3. Keep the tubes at room temperature for a few hours to 
                                             allow diffusion across the interfaces, and thereby even out the 
                                             sharp borders between fractions. 
                                             4. Layer the suspension to be fractionated carefully on top. 
                                             Stir the sample and upper Ficoll layer gently with a glass rod 
                                             to eliminate the interface between them before centrifugation. 
                                             During centrifugation, particles collect either in or between 
                                             the various Ficoll layers, depending on the density of the 
                                             layers. The cells/organelles collect at a lower density than on 
                                             sucrose gradients of equivalent concentration, as Ficoll does 
                                             not penetrate cell membranes. After centrifugation, pipette 
                                             off the various phases, and remove the Ficoll from the 
                                             required fraction by repeatedly diluting with buffer, and 
                                             centrifuging to sediment the particles. Residual amounts of 
                                             Ficoll PM 400 in the sample can be estimated with the 
                                             anthrone reaction (1). 
                                             
                                          
                                          
                                             
                                             
                                             
                                             | 
                                              La centrifugation est une méthode couramment utilisée en biochimie pour séparer ou analyser des fractions ou des structures
                                             cellulaires, des macromolécules, etc. 
                                             On peut accentuer ou raffiner les méthodes de séparation en faisant cette centrifugation dans un gradient de concentration.
                                             En effet, un des facteurs qui influence la vitesse de sédimentation est la différence entre la densité de la particule et
                                             celle du solvant. On peut donc moduler cette vitesse en faisant varier de façon continue ou par étape (discontinue) cette
                                             différence de densité en créant un gradient de concentration. 
                                             Si la densité de la particule est plus grande que celle du milieu, elle sédimentera. Plus la différence de densité est
                                             grande plus la sédimentation est rapide. S'il n'y a aucune différence de densité, il n'y aura aucune sédimentation, quelle
                                             que soit l'accélération. Si la particule est moins dense que celle du milieu, celle-ci s'élèvera dans le tube jusqu'à atteindre
                                             un niveau de densité égal à la sienne ou, le cas échéant, jusqu'à flotter à la surface. 
                                             
                                               
                                             
                                              |  
                                             
                                             | 
                                              | 
                                             
                                              | 
                                             
                                             
                                              
                                             
                                             MÉTHODES ET APPAREILLAGE
                                             Fabrication des gradients
                                             Les variations de densités sont obtenues en faisant varier la concentration d'un produit chimique dans la solution. Divers
                                             produits peuvent être utilisés pour faire ces gradients. Ils doivent être très solubles en solution aqueuse, ce qui permet
                                             d'obtenir des densités suffisantes. On recherche aussi des produits qui sont relativement inertes, peu coûteux, faciles à
                                             manipuler, non toxiques, etc. Évidemment aucun produit ne réunit toutes ces qualités et on doit choisir en tenant compte des
                                             contraintes expérimentales 
                                             Le saccharose ("sucrose") est très souvent employé. Il permet d'atteindre des densités assez élevées, de l'ordre
                                             de 1.3 g/mL avec du saccharose 2.5 M. Ce produit a l'avantage d'être peu coûteux, électriquement neutre et plutôt inerte pour
                                             la plupart des fractions cellulaires. Son principal défaut est sa viscosité à forte concentration, ce qui rend son utilisation
                                             plus difficile. Il est aussi à déconseiller si la pression osmotique est un facteur important, par exemple dans l'isolement
                                             de cellules entières.  |    
                                             http://www.chimie-biochimie.umoncton.ca/bch/dg/siitub/centgradient.html 
                                             Au début de la centrifugation, le mélange contenant la substance a isoler est déposée à la surface
                                             du liquide. Au cours de la centrifugation, la molécule descend en fonction de sa densité. La vitesse de sédimentation est
                                             exprimée dans une unité indépendante des densitées du milieu et de l'accélération : le Svedberg (S). Plus la valeur en Svedberg
                                             est élevée, plus elle arrivera vite au fond du tube. A la fin de la centrifugation, le tube contient deux phases distinctes
                                             : un dépot plus ou moins solide au fond du tube qui correspond au molécules ayant reussi à sédimenter jusqu'au bout et appelé
                                             culot, un phase liquide qui contient toute les molécules n'ayant pas atteind le fond du tube, le surnageant. Selon les cas,
                                             la molécules désirée est dans le culot, le surnageant ou repartie entre les deux (dans ce dernier cas, cela signifie que les
                                             paramêtres de centrifugation ont été mal choisis). 
                                             http://webiologie.free.fr/techniques/purification/centrifugation.html 
                                               
                                             cytologie methodes: 
                                             http://www.fmed.ulaval.ca/bio-11134/Cytol-RP-Notes-p1.pdf
                                              
                                           
                                          
                                           
                                          cy·to·plast The intact cytoplasm
                                             of a single cell. 
                                              
                                           
                                          
                                             cytochalasin
                                             A group of fungal metabolites that inhibit the addition of G actin to a nucleation site and therefore perturb labile microfilament arrays. Cytochalasin B inhibits at around 1 microgram/ml but at about 5 _g/ml begins to inhibit glucose transport. Cytochalasin D affects only the microfilament system and is therefore preferable.  
                                             alpha tubulin marker :  
                                             Tubulin is the protein that polymerizes into long chains or filaments that form microtubules, hollow fibers which serve
                                             as a skeletal system for living cells. Microtubules have the ability to shift through various formations which is what enables
                                             a cell to undergo mitosis or to regulate intracellular transport. The formation-shifting of microtubules is made possible
                                             by the flexibility of tubulin which is why scientists have sought to understand the protein's atomic structure since its discovery
                                             in the 1950s.  
                                             mouse monoclonal anti– -tubulin antibody (A11126) in combination with Alexa Fluor 546 goat anti–mouse IgG antibody 
                                              
                                           
                                          
                                             Moving boundary/Zone Centrifugation :
                                             http://ntri.tamuk.edu/centrifuge/centrifugation.html 
                                             A third method of defining centrifugation is by the way the samples are applied to the centrifuge tube. In
                                             moving boundary (or differential centrifugation), the entire tube is filled with sample and centrifuged. Through centrifugation,
                                             one obtains a separation of two particles but any particle in the mixture may end up in the supernatant or in the pellet or
                                             it may be distributed in both fractions, depending upon it size, shape, density, and conditions of centrifugation. The pellet
                                             is a mixture of all of the sedimented components, and it is contaminated with whatever unsedimented particles were in the
                                             bottom of the tube initially. The only component which is purified is the slowest sedimenting one, but its yield is often
                                             very low. The two fractions are recovered by decanting the supernatant solution from the pellet. The supernatant can be recentrifuged
                                             at higher speed to obtain further purification, with the formation of a new pellet and supernatant 
                                               
                                             
                                             In rate zonal centrifugation, the sample is applied in a thin zone at the top of the centrifuge tube on a density gradient.
                                             Under centrifugal force, the particles will begin sedimenting through the gradient in separate zones according to their size
                                             shape and density. The run must be terminated before any of the separated particles reach the bottom of the tube.  
                                             Zone Velocity Centrifugation:
                                             http://bioweb.wku.edu/courses/Biol502/centrifugation.html 
                                             A method that results in yields greater than differential centrifugation and allows greater resolution of
                                             all particles sizes is zone velocity centrifugation.  A sample is layered on top of a shallow density gradient and then centrifuged. Each particle size will migrate as a zone or
                                             band at a characteristic velocity. If the velocities of the particles are sufficiently different then the zones of the particles
                                             will resolve. The gradient through which the particles are centrifuged is used to stablilze the zones during recovery and
                                             helps prevent mixing of resolved zones. The density of the gradient material should be less than the components being sedimented.
                                              
                                              
                                               
                                           
                                            
                                          
                                           
                                          
                                           
                                          Horseradish peroxidase 
                                             
                                              is a heme protein found in the roots of the horseradish and has a molecular weight of about 40,000
                                             daltons. we see in the microscope a reaction product produced by incubation with an appropriate substrate and hydrogen peroxide.
                                             In consequence, a relatively small number of enzyme molecules can create an easily visualized precipitate. Interestingly,
                                             the sequence of reactions involved is similar to the reactions that produce melanins. 
                                             horseradish (horse·rad·ish) (h[omacr]rs¢rad-ish)  1. Armoracia lapathifolia.  2. any of several other plants of the family Cruciferae resembling A. lapathifolia.  3. the
                                             pungent root of one of these plants, used as a condiment and appetite stimulant; in the past it was used as a rubefacient
                                             and plaster like mustard, because it contains sinigrin. 
                                             horseradish peroxidase (horse·rad·ish per·ox·i·dase) (hors¢rad-ish
                                             p[schwa]r-ok¢s[ibreve]-d[amacr]s²)  peroxidase isolated from horseradish
                                             (Armoracia lapathifolia); used as a reagent in biochemical assays. Abbreviated HRP . 
                                             The western blotting technique for the immunochemical detection and analysis
                                             of proteins can be performed with radioisotopic, colorimetric, fluorescent, and chemiluminescent modes
                                             of detection 1. The scope and flexibility of the fluorescence detection modes are now significantly enhanced
                                             by the addition of a specific substrate for peroxidase-based western blots that allows for both chemiluminescent and fluorescent detection. The new Amersham Pharmacia Biotech ECL Plus substrate
                                             used in the detection of horseradish peroxidase (HRP)-based westerns is compatible with direct
                                             image analysis using the Molecular Dynamics Storm gel and blot imaging system. Storm system imaging of
                                             western blots developed with ECL Plus results in detection limits that match those
                                             obtained with film-based exposures and may  complement, or offer advantages to, the previously described
                                             ECF chemifluorescence approach2. Storm system image analysis of western blots using ECL Plus can be
                                             applied to current HRPdetection protocols for fast and sensitive protein immune detection. http://www.link.med.ed.ac.uk/ELEGI/downloads/ECL%20plus.pdf 
                                             The chemiluminescent signal was captured on Hyperfilm™ (Amersham Pharmacia
                                             Biotech) using a 30 sec exposure for optimal contrast. 
                                               
                                             http://www4.amershambiosciences.com/aptrix/upp01077.nsf/Content/Products?OpenDocument&parentid=577914&moduleid=46852#content 
                                               
                                             
                                             Speed and Sensitivity
                                             Lumigen PS-atto is the newest substrate for the chemiluminescent detection
                                             of HRP conjugates. Reaction of the substrate with an HRP label rapidly generates sustained high-intensity luminescence for
                                             maximum detection sensitivity in solution assays. Lumigen PS-atto replaces Lumigen PS-1 for solution applications using peroxidase
                                             detection. 
                                             
                                               
                                              
                                             
                                             
                                          
                                          
                                             Sites of Leukotriene Biosynthesis   
                                             http://www.jfmed.uniba.sk/patfyz/separatky/Role_of_Leukotrienes_in_Inflammation/t.html The locations at which the leukotrienes are synthesized are determined by the cellular distribution of the enzymes
                                             controlling each stage of the biosynthetic pathway. Because 5-lipoxygenase is only found in cells of myeloid lineage, the
                                             synthesis of LTA4 is limited to these cells [17]. However, the enzymes determining the next step in the arachidonic acid cascade, either to LTB4 or
                                             to the sulfidopeptide leukotrienes, are more widely distributed; thus, metabolism of LTA4 may occur in an equally
                                             wide range of cell types. The export of LTA4 from cells that can actively synthesize it enables a much broader
                                             range of cells to act as leukotriene secretors.  
                                              
                                             
  
                                           
                                          
                                               
                                             
                                             Figure 2.   Model of cellular leukotriene biosynthesis. Stimulation of the cell leads to mobilization
                                             of Ca2+, which triggers activation and translocation of cytosolic phospholipase A2 (cPLA2)
                                             and 5-lipoxygenase (5-LO) to the nuclear envelope. Together with five lipoxygenase-activating protein (FLAP) these enzymes
                                             constitute a biosynthetic complex that produces LTA4 for further biosynthesis of LTB4 and LTC4
                                             via the soluble LTA4 hydrolase and membrane-bound LTC4 synthase, respectively. http://ajrccm.atsjournals.org/cgi/content/full/161/2/S1/S25
                                               
                                           
                                          
                                             NOUVEAU REACTIF CHIMILUMINESCENT, 
                                             La luminescence est le phénomène par lequel certaines molécules portées à un état excité retournent
                                             à l'état fondamental en restituant une partie de l'énergie sous forme d'émission de lumière. On distingue plusieurs types
                                             de luminescence selon la source d'énergie impliquée dans le processus d'excitation. 
                                              Lorsque l'énergie qui permet aux molécules d'atteindre l'état excité provient d'une réaction
                                             chimique, il s'agit du phénomène de chimiluminescence. La bioluminescence, qui est le phénomène d'émission de lumière observé
                                             chez certains organismes vivants, peut être considérée comme un cas particulier de chimiluminescence pour lequel une protéine,
                                             le plus souvent enzymatique, est impliquée dans la réaction génératrice de lumière. 
                                              La chimiluminescence est à l'origine de signaux utilisables en immunoanalyse, soit pour un dosage,
                                             soit pour une recherche qualitative. Deux réactions d'émission de lumière sont particulièrement exploitées dans ce domaine
                                             : 
                                              - la chimiluminescence des 1,2-dioxétanes, 
                                              - la chimiluminescence du luminol. 
                                              REACTION DE CHIMILUMINESCENCE DES 1,2-DIOXETANES. 
                                              Les 1,2-dioxétanes utilisés pour les mesures par luminescence sont des composés stables à température
                                             ambiante et qui, sous l'action de la chaleur, se décomposent en deux produits carbonylés dont l'un est à l'état excité et
                                             est donc susceptible d'émettre de la lumière. La stabilité des dioxétanes à température ambiante dépend de la nature des substituants
                                             présents sur l'hétérocyclobutane; 
                                              Il est possible de synthétiser des dérivés stables non luminescents qui, sous l'action d'un
                                             enzyme, produiront un intermédiaire instable se décomposant en émettant de la lumière. C'est le cas de l'AMPPD (3-(2'-spiroadamantane)-4-méthoxy-4-(3"-phosphoryloxy)phényl-1,2-dioxétane).
                                             L'enzyme déclenchant est la phosphatase alcaline. L'hydrolyse enzymatique de cet ester phosphorique génére de l'AMPD-, instable,
                                             qui se scinde en deux produits dont l'un, l'anion méthyl m-oxybenzoate émet de la lumière . 
                                              Un conjugué marqué par la phosphatase alcaline peut ainsi être détecté par cette méthode. L'addition
                                             de micelles constituées de molécules fluorescentes et de bromure de cétyltriméthylammonium permet d'amplifier le signal luminescent
                                             produit au cours de cette réaction. 
                                              REACTION DE CHIMILUMINESCENCE DU LUMINOL 
                                              En milieu alcalin, l'oxydation du luminol (5-amino-2,3-dihydrophthalazine-1,4-dione) produit
                                             une émission lumineuse. L'agent oxydant le plus utilisé est le peroxyde d'hydrogène. Cette réaction de chimiluminescence peut
                                             être catalysée par la peroxydase de raifort et la quantité de lumière émise est proportionnelle à la quantité de catalyseur
                                             si les substrats de la réaction sont en excès.  
                                             http://www.gazettelabo.fr/2002archives/pratic/1996/5reactif.htm
                                               
                                           
                                          
                                        |